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大年初一上班的收获:FDA Clears Molecular Test for Clostridium difficile

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发表于 2012-1-24 14:52 | 显示全部楼层 |阅读模式

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今天在UCLA上班,学习了一下Clostridium difficile的分子检测,感触很大。晚上回来查了一下资料,FDA是2010年7月才批准该项目的,UCLA已将之用于临床近半年了。

附:FDA批准的资料
July 22, 2010 — The US Food and Drug Administration (FDA) has granted 510(k) clearance for a molecular amplification assay (illumigene C. difficile; Meridian Bioscience, Inc) that detects and amplifies a pathogenic DNA region common to all toxin-producing strains of Clostridium difficile bacteria. The highly sensitive test is performed on stool samples and yields results in less than 1 hour.

Illumigene is a simplified new technology platform, based on loop-mediated isothermal amplification (LAMP; licensed from Eiken Chemicals, Ltd) that makes molecular diagnostic testing possible for any size laboratory.

In contrast with most currently available molecular assays using polymerase chain reaction methods that require sample temperatures to be raised and lowered several times during the amplification process, LAMP technology is isothermal and therefore requires no costly capital equipment.

"Some years ago, Meridian recognized that our infectious disease lab customers may require molecular amplification capabilities in specific instances. Our goal has been to deliver the power of molecular amplification in a platform that is simple, highly cost effective, and accessible for any of our lab customers," said John A. Kraeutler, Meridian chief executive officer, in a company news release.

According to information on the Eiken Web site, LAMP is characterized by its use of 4 different primers specifically designed to recognize 6 distinct regions on the target gene and by its process being performed at a constant temperature using a strand displacement reaction.

"Our [research and development] team has worked diligently for the past four years to refine and simplify this technology. The workflow is straight-forward so that the benefits of molecular diagnostics can be made available to any lab," noted John A. Kraeutler in a Meridian news release. "The clinical trials that support the performance of illumigene were thorough and we are pleased with the performance of the test."

The C difficile LAMP assay previously was cleared for use in the European Union.

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 楼主| 发表于 2012-1-24 14:55 | 显示全部楼层
又查到JCM的介绍LAMP方法学的文献,供大家学习与讨论用。

Rapid and Sensitive Loop-Mediated Isothermal Amplification 1 (LAMP) Test for CD.pdf (289.17 KB, 下载次数: 26)

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 楼主| 发表于 2012-1-24 14:57 | 显示全部楼层
American Society for Clinical Pathology (ASCP) 2011 Annual Meeting
也对该分子检测方法进行了介绍

Amplification Assay Effective at Detecting C difficile
Jim Kling

October 24, 2011 (Las Vegas, Nevada) — The illumigene loop-mediated isothermal amplification (LAMP, Meridian Bioscience) assay outperforms enzyme immunoassays (EIAs) in the detection of Clostridium difficile, which is a common cause of antibiotic-associated diarrhea and pseudomembranous colitis. This finding comes from a study presented here at the American Society for Clinical Pathology 2011 Annual Meeting.

Toxigenic culture remains the gold standard for diagnosing the presence of C difficile, but it has a long turnaround time. EIAs are faster but are limited by lower sensitivity and specificity.

Molecular assays have been reported to have similar sensitivity and specificity to toxigenic culture, with shorter turnaround times. The researchers conducted a study to compare LAMP with their facility's current EIA method (Premier Toxins A&B, Meridian Bioscience) to determine if LAMP could be adopted for use.

The LAMP assay uses amplification to detect the pathogenicity locus, which is universal to toxigenic C difficile strains. The team's EIA method detects toxins A and B. The study involved 95 nonformed raw stool specimens from hospitalized patients; these were tested using both methods. Disagreements between the 2 methods were resolved with a polymerase chain reaction (PCR) method to detect the tcdC regulatory gene.

In all, 82 of 95 specimens had negative results on both tests and 7 had positive results on both tests. The results of 6 were in disagreement. Four samples were positive with LAMP and negative with EIA; these tested positive on PCR. Two samples that were negative with LAMP and positive with EIA tested negative on PCR.

The EIA method had a 64% sensitivity and 98% specificity, compared with 100% sensitivity and 100% specificity for LAMP. The LAMP assay had a turnaround time similar to EIA.

"C difficile has been an ongoing problem in diagnosis. LAMP had the same turnaround time to run the test as our old assay, with much better results," Dawn Morong, MT, senior medical technologist at NorDx clinical laboratory, who presented the research, told Medscape Medical News.

The study confirms what others have found, which is that molecular assays tend to be more accurate than other approaches, according to Frederick S. Nolte, PhD, director of the molecular pathology laboratory at the Medical University of South Carolina in Charleston.

"[LAMP] is simple to do. It may not be quite as sensitive as the PCR-based assays, but it doesn't require any expensive equipment. [That might make it] more accessible to labs that may not have molecular pathology or molecular biology experience. It's a way of pushing that technology out to [settings] that aren't as sophisticated when it comes to molecular analysis," Dr. Nolte told Medscape Medical News.

Ms. Morong has disclosed no relevant financial relationships. Dr. Nolte reports receiving research funding and honoraria from BD Diagnostics, which markets a PCR-based assay for C difficile.

American Society for Clinical Pathology (ASCP) 2011 Annual Meeting: Abstract 171. Presented October 20, 2011.


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 楼主| 发表于 2012-1-24 15:00 | 显示全部楼层
2011年10月还是作为科研最新的资料在世界顶级的会议进行交流的同时,UCLA的临床微生物学实验室已将之用于临床,可想一下,这是什么样的速度。

想想在国内,可能做到如此的迅速吗?不说别的,要想在医院开这个项目,先得拿到国家SFDA的批文吧,每个省都得报一下物价吧。往快的速度来说,没有个三年是搞不定的。慢的话,就不知道要多少年了......
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发表于 2012-1-24 15:10 | 显示全部楼层
许多工作的开展我们是该提速了,对科技成果转化为生产力,不能只停留在口头上,而要付之以行动。
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发表于 2012-1-24 16:03 | 显示全部楼层
Doctor Gu, that's very kind of you. Could you give us some introductions of tests commonly used for detecting epidemic MDRO (AB, MRSA, VRE, etc )in UCLA in your convenient time?
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发表于 2012-1-24 17:08 | 显示全部楼层
生产力快速转化!!!!
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 楼主| 发表于 2012-1-25 06:09 | 显示全部楼层

In fact, I came to UCLA only for one week, therefore, I have not seen the molecular test for the MDRO. Maybe in the future, I would learn something related to these test. Then I would introduce them to you.
Thank you!
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 楼主| 发表于 2012-1-25 06:10 | 显示全部楼层
xinanw 发表于 2012-1-24 17:08
生产力快速转化!!!!

That's right. It is very important to the development of clinical and research in China.
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发表于 2012-1-31 14:24 | 显示全部楼层
细菌耐药 发表于 2012-1-24 15:00
2011年10月还是作为科研最新的资料在世界顶级的会议进行交流的同时,UCLA的临床微生物学实验室已将之用于临 ...

据说很多出国学习的人刚回来时都是热血澎湃地想大干一番,想把在国外学的知识应用到国内实际工作中。结果发现,什么都干不成.....久而久之,就又回到出国前的状态了~

真的希望并祝福细菌耐药版主可以不受任何限制地大展宏图!

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可能与中国特色的国情有关,先进的技术,好的理念未必能在中国的土地上生长,但是我们还是应该应自己的能力做点事。  发表于 2012-1-31 22:55
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发表于 2012-1-31 14:48 | 显示全部楼层
真的希望细菌耐药版主可以为我们做点实事。
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发表于 2012-1-31 19:13 | 显示全部楼层
细菌耐药 发表于 2012-1-24 15:00
2011年10月还是作为科研最新的资料在世界顶级的会议进行交流的同时,UCLA的临床微生物学实验室已将之用于临 ...

现在国内除了循证医学还有转化医学也是比较热,但是转化的速度就不敢说热了。
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